STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2739Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1058 aa)    
Predicted Functional Partners:
XF_2742
Type I restriction-modification system DNA methylase; Similar to GI|2624278 (percent identity: 53 %/query alignment coverage: 100.6 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.955
XF_2741
Type I restriction-modification system specificity determinant; Similar to GI|2408222 (percent identity: 24 %/query alignment coverage: 105.1 %/subject alignment coverage: 98.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.938
XF_0296
Type I restriction-modification system specificity determinant; Similar to GI|2129238 (percent identity: 27 %/query alignment coverage: 62.7 %/subject alignment coverage: 65.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.603
XF_2723
Type I restriction-modification system DNA methylase; Similar to GI|6137148 (percent identity: 44 %/query alignment coverage: 18.2 %/subject alignment coverage: 14.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.582
XF_2724
Type I restriction-modification system; Similar to GI|2408224 (percent identity: 25 %/query alignment coverage: 92.9 %/subject alignment coverage: 65.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.582
XF_2728
Type I restriction-modification system DNA methylase; Similar to GI|2313984 (percent identity: 61 %/query alignment coverage: 99.4 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.582
XF_2740
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.573
XF_2726
Type I restriction-modification system specificity determinant; Similar to GI|2921239 (percent identity: 24 %/query alignment coverage: 99.8 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.461
XF_2722
Type I restriction-modification system specificity determinant; Similar to SP|Q58615 (percent identity: 21 %/query alignment coverage: 67.3 %/subject alignment coverage: 74.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.432
XF_2747
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.428
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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