AOV15923.1 protein (Acidihalobacter prosperus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AOV15923.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)

Predicted Functional Partners:

AOV15919.1

0.987

AOV15922.1

0.974

AOV15921.1

0.968

AOV15920.1

0.967

AOV15835.1

0.937

AOV18337.1

0.928

AOV15834.1

0.924

AOV15836.1

0.922

AOV17945.1

0.871

AOV16675.1

0.857

Your Current Organism:

Acidihalobacter prosperus

NCBI taxonomy Id: 160660
Other names: A. prosperus, DSM 5130, JCM 30709, Thiobacillus prosperus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOV15834.1	AOV15835.1	BJI67_01015	BJI67_01025	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AOV15834.1	AOV15836.1	BJI67_01015	BJI67_01030	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AOV15834.1	AOV15919.1	BJI67_01015	BJI67_01480	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AOV15834.1	AOV15920.1	BJI67_01015	BJI67_01485	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AOV15834.1	AOV15922.1	BJI67_01015	BJI67_01495	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.962
AOV15834.1	AOV15923.1	BJI67_01015	BJI67_01500	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AOV15834.1	AOV16675.1	BJI67_01015	BJI67_05995	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
AOV15834.1	AOV17945.1	BJI67_01015	BJI67_13535	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	D-arabinose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
AOV15834.1	AOV18337.1	BJI67_01015	BJI67_01020	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.999
AOV15835.1	AOV15834.1	BJI67_01025	BJI67_01015	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.990
AOV15835.1	AOV15836.1	BJI67_01025	BJI67_01030	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AOV15835.1	AOV15919.1	BJI67_01025	BJI67_01480	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AOV15835.1	AOV15920.1	BJI67_01025	BJI67_01485	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
AOV15835.1	AOV15921.1	BJI67_01025	BJI67_01490	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.950
AOV15835.1	AOV15922.1	BJI67_01025	BJI67_01495	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.992
AOV15835.1	AOV15923.1	BJI67_01025	BJI67_01500	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOV15835.1	AOV17945.1	BJI67_01025	BJI67_13535	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-arabinose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AOV15835.1	AOV18337.1	BJI67_01025	BJI67_01020	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.995
AOV15836.1	AOV15834.1	BJI67_01030	BJI67_01015	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inner-membrane translocator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.981
AOV15836.1	AOV15835.1	BJI67_01030	BJI67_01025	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959