Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ55736.1Protein prkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)    
Predicted Functional Partners:
AIQ55735.1
Stress response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
AIQ55734.1
Stage V sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
AIQ57360.1
Stage V sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
AIQ57402.1
Stress response protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.
 
  
 0.948
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.608
AIQ59041.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.552
AIQ59156.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
AIQ59557.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.515
AIQ58925.1
Spore gernimation protein GerQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.505
AIQ56462.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
    0.494
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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