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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ55811.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)    
Predicted Functional Partners:
AIQ61356.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.978
AIQ55812.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.973
AIQ57529.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.965
AIQ60827.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.912
AIQ57530.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.910
AIQ61009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.820
AIQ60083.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.814
AIQ60838.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.803
AIQ58626.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.799
AIQ60015.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.797
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.