Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AIQ55823.1Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
AIQ55824.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.995
AIQ55822.1
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.869
AIQ56995.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.794
AIQ60126.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.764
AIQ57143.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.763
AIQ57135.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.760
AIQ57131.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
AIQ60508.1
Glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.666
AIQ60064.1
Glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.655
AIQ57236.1
Glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.650
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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