Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ55976.1Heptaprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
AIQ55975.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.986
AIQ56809.1
Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.900
AIQ55978.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
AIQ57698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.853
AIQ55980.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.844
AIQ55979.1
Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.795
cbiO
With CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
AIQ55981.1
Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.673
AIQ55982.1
Prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.
       0.653
AIQ61404.1
1,4-dihydroxy-2-naphthoate prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.632
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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