Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56083.1UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)    
Predicted Functional Partners:
AIQ56082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.869
AIQ56080.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.788
AIQ56084.1
Myo-inositol-1-monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily.
       0.706
AIQ59789.1
Spore photoproduct lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.544
AIQ56079.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.483
AIQ56085.1
Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
AIQ58178.1
Cation transporter; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
     0.448
AIQ56561.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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