STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56115.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)    
Predicted Functional Partners:
AIQ56114.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.784
AIQ57010.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.657
AIQ60083.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.621
AIQ59411.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.599
hpf
Sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.523
AIQ57409.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
 
  
 0.508
AIQ56113.1
DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.499
AIQ56462.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
 
  
 0.487
AIQ55785.1
Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.472
AIQ56072.1
Epoxyqueuosine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.472
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.