Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ56163.1Prolyl 4-hydroxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
AIQ56162.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.613
AIQ55784.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.544
AIQ60845.1
DNA photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.543
AIQ55754.1
Alkylhydroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
AIQ60418.1
NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
AIQ59432.1
DNA-directed RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
AIQ56282.1
RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
AIQ59433.1
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
     0.462
AIQ55753.1
RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
AIQ55786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.443
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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