Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56338.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)    
Predicted Functional Partners:
AIQ56337.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
AIQ57010.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.876
AIQ60083.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.853
AIQ57487.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.824
AIQ61357.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.820
AIQ60051.1
Heme response regulator HssR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.817
AIQ58507.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.811
AIQ57062.1
Heme response regulator HssR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.807
AIQ58923.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.805
AIQ59428.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.801
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.