Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ56516.1PTS galactitol transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)    
Predicted Functional Partners:
gatC
PTS system galactitol-specific transporter subunit IIC; With GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AIQ56515.1
PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
AIQ56514.1
Transcription antiterminator BglG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.970
AIQ56522.1
Phosphocarrier protein HPr; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
AIQ57260.1
PTS maltose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
AIQ57440.1
PTS maltose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
AIQ58176.1
PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
AIQ57087.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.832
AIQ56518.1
Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.828
AIQ56250.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.783
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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