Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56592.1PalA; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
AIQ60020.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
AIQ58319.1
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
AIQ57832.1
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
AIQ55958.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
AIQ58322.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
AIQ58524.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
AIQ60021.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
AIQ58479.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
AIQ56591.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
AIQ58478.1
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.598
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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