Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ56602.1alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
AIQ57159.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.959
AIQ57852.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.958
AIQ60983.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.955
AIQ57986.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.904
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
   
 0.825
AIQ56600.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.742
AIQ56599.1
N-acetylmannosamine-6-phosphate 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
AIQ58793.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.703
AIQ57449.1
Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.642
AIQ60763.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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