STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56865.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
AIQ55643.1
CheY-like receiver; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.907
AIQ59428.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
AIQ56864.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.710
AIQ56337.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
AIQ60051.1
Heme response regulator HssR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.686
AIQ57530.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
AIQ57487.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.647
AIQ58597.1
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.644
AIQ58625.1
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.642
AIQ60837.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.639
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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