Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56880.1Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)    
Predicted Functional Partners:
AIQ56881.1
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.780
AIQ56878.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AIQ56879.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
AIQ56891.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.629
AIQ56496.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.592
AIQ56888.1
5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.568
AIQ60679.1
Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
AIQ60529.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.404
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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