STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56900.1LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
AIQ56909.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.748
AIQ56906.1
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.689
AIQ56908.1
Methyltryptophan oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.634
AIQ56901.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
AIQ56902.1
L-cystine-binding protein TcyJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
AIQ56903.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
AIQ56905.1
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
AIQ56907.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
AIQ56904.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
AIQ56496.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.417
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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