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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ56901.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
AIQ56902.1
L-cystine-binding protein TcyJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.892
AIQ56908.1
Methyltryptophan oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
AIQ56906.1
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.753
AIQ56903.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.738
AIQ56904.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
AIQ56910.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.704
AIQ56909.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.698
AIQ56905.1
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.696
AIQ56907.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
AIQ61634.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.651
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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