Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AIQ56901.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
AIQ56902.1
L-cystine-binding protein TcyJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.890
AIQ56908.1
Methyltryptophan oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.815
AIQ56906.1
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.781
AIQ56903.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.734
AIQ56904.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.726
AIQ56910.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.699
AIQ56909.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.694
AIQ56905.1
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
AIQ56907.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.667
AIQ61634.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.646
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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