Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ57112.1Arabinose transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
AIQ57111.1
Arabinose transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.994
AIQ57110.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.986
AIQ55655.1
Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.948
AIQ57119.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.904
AIQ57716.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.813
AIQ59357.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.812
AIQ57623.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.811
AIQ59978.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.811
AIQ60888.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.811
AIQ58730.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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