Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ57130.1Xanthan lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
AIQ56863.1
Thioredoxin peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.777
AIQ57568.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.702
AIQ56308.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
AIQ59812.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
AIQ57664.1
Sugar:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
AIQ60422.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
AIQ57137.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.522
AIQ57750.1
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.
     
 0.515
AIQ57131.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AIQ57575.1
Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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