Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ57742.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)    
Predicted Functional Partners:
AIQ57741.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.823
AIQ57740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
AIQ57743.1
Oligopeptidase PepB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.676
AIQ57103.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.618
AIQ58187.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
AIQ60393.1
Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
secF
Hypothetical protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.459
AIQ57744.1
Signal transduction histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.421
AIQ58742.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.421
AIQ59009.1
HAD family hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
   
    0.421
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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