Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AIQ57832.1Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)    
Predicted Functional Partners:
AIQ57833.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.821
AIQ56592.1
PalA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
AIQ58322.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.740
AIQ60020.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.725
AIQ58320.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.721
AIQ56678.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.716
AIQ58474.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.697
AIQ57831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.678
AIQ61378.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
AIQ56028.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.650
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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