Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIQ58522.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
AIQ59888.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.814
AIQ59976.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.803
AIQ59133.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.802
AIQ56365.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.787
AIQ57247.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.787
AIQ57074.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.784
AIQ58716.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.784
AIQ59618.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.784
AIQ60125.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.783
AIQ56307.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.781
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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