STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ58696.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)    
Predicted Functional Partners:
AIQ60087.1
Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.546
AIQ55964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.544
AIQ57020.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
AIQ57159.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
AIQ60983.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
AIQ57121.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
AIQ59867.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
AIQ57852.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
AIQ57897.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.456
AIQ58697.1
Phosphoenolpyruvate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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