Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIQ58732.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1177 aa)    
Predicted Functional Partners:
AIQ56159.1
Glycoside hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.972
AIQ57804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.971
AIQ60377.1
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.968
AIQ60609.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.962
AIQ58116.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.931
AIQ58029.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.930
AIQ60998.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.925
AIQ57342.1
Cellobiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.901
AIQ56995.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.881
AIQ60894.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.777
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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