Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ58796.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)    
Predicted Functional Partners:
AIQ55707.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.954
AIQ59861.1
Pectin methylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.947
AIQ57373.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.942
AIQ58082.1
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.803
AIQ56995.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.776
AIQ56232.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.773
AIQ60609.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.744
AIQ58483.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.741
AIQ57877.1
Arabinoxylan arabinofuranohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
AIQ56159.1
Glycoside hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.722
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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