STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ59112.1Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)    
Predicted Functional Partners:
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.704
AIQ57017.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
AIQ56224.1
Rhamnogalacturonyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
AIQ60782.1
Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
AIQ57375.1
Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
AIQ59862.1
Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
AIQ57794.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
AIQ59975.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
AIQ58740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.482
AIQ57664.1
Sugar:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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