Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AIQ60142.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
AIQ60143.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
AIQ58585.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
AIQ58591.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.954
AIQ60134.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.953
AIQ58376.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.925
AIQ58586.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.900
AIQ57010.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.801
AIQ60083.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.780
AIQ58923.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.764
AIQ61009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.742
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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