Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ60536.1Lon protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)    
Predicted Functional Partners:
AIQ59777.1
Stage III sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.754
AIQ59774.1
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.659
clpX
ATP-dependent protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
  
 0.646
AIQ61729.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.622
AIQ59775.1
Stage III sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.616
AIQ60537.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.616
AIQ57281.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
AIQ59733.1
Stage II sporulation protein M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.583
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
  
 0.578
AIQ60538.1
Spore gernimation protein GerC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.568
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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