STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ61080.1Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)    
Predicted Functional Partners:
AIQ61084.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
AIQ61081.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
AIQ61088.1
Phage-like element PBSX protein XkdK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.988
AIQ61083.1
Phage-like element PBSX protein XkdQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.972
AIQ61082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.971
AIQ61085.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.966
AIQ61086.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.949
AIQ61077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.941
AIQ61087.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.938
AIQ61110.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
Your Current Organism:
Paenibacillus borealis
NCBI taxonomy Id: 160799
Other names: CCUG 43137, CIP 107056, DSM 13188, Paenibacillus borealis Elo et al. 2001, strain KK19
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