STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000949385_03111Unannotated protein. (434 aa)    
Predicted Functional Partners:
GCA_000949385_03110
Unannotated protein.
 0.986
GCA_000949385_03409
Unannotated protein.
 
0.976
GCA_000949385_05114
Unannotated protein.
  
 0.918
GCA_000949385_00708
Unannotated protein.
   
0.906
GCA_000949385_05224
Unannotated protein.
 
 
0.898
GCA_000949385_04320
Unannotated protein.
 
 
0.869
GCA_000949385_05162
Unannotated protein.
 0.862
GCA_000949385_00252
Unannotated protein.
 
 0.861
GCA_000949385_04393
Unannotated protein.
 
 
0.861
GCA_000949385_00325
Unannotated protein.
 
 
0.856
Your Current Organism:
Pseudomonas sp. LFM046
NCBI taxonomy Id: 1608357
Other names: P. sp. LFM046
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.