LOC107676286 protein (Sinocyclocheilus anshuiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107676286

T-box brain protein 1-like. (675 aa)

Predicted Functional Partners:

ENSSANP00000044327

0.523

ENSSANP00000045066

0.523

ENSSANP00000102423

0.521

ENSSANP00000034355

0.454

ENSSANP00000071087

0.454

ENSSANP00000087254

0.454

LOC107653269

0.452

ENSSANP00000072692

0.452

LOC107664735

0.440

LOC107662039

0.440

Your Current Organism:

Sinocyclocheilus anshuiensis

NCBI taxonomy Id: 1608454
Other names: KIZ 12060239, KIZ 12070271, KIZ 12070276, KIZ 12070277, KIZ 12070280, S. anshuiensis, Sinocyclocheilus anshuiensis Gan, Wu, Wei & Yang, 2013

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSANP00000034355	LOC107676286	ENSSANP00000034355	ENSSANP00000068795	annotation not available	T-box brain protein 1-like.	0.454
ENSSANP00000044327	LOC107676286	ENSSANP00000044327	ENSSANP00000068795	DNA-binding protein SATB2-like.	T-box brain protein 1-like.	0.523
ENSSANP00000045066	LOC107676286	ENSSANP00000045066	ENSSANP00000068795	DNA-binding protein SATB2-like.	T-box brain protein 1-like.	0.523
ENSSANP00000071087	LOC107676286	ENSSANP00000071087	ENSSANP00000068795	Dual specificity mitogen-activated protein kinase kinase 6 isoform X1.	T-box brain protein 1-like.	0.454
ENSSANP00000072692	LOC107676286	ENSSANP00000072692	ENSSANP00000068795	Forkhead box H1.	T-box brain protein 1-like.	0.452
ENSSANP00000087254	LOC107676286	ENSSANP00000087254	ENSSANP00000068795	Mitogen-activated protein kinase kinase 6.	T-box brain protein 1-like.	0.454
ENSSANP00000102423	LOC107676286	ENSSANP00000102423	ENSSANP00000068795	CD4-1 molecule.	T-box brain protein 1-like.	0.521
LOC107653269	LOC107676286	ENSSANP00000045239	ENSSANP00000068795	Forkhead box protein H1.	T-box brain protein 1-like.	0.452
LOC107662039	LOC107676286	ENSSANP00000063216	ENSSANP00000068795	Homeobox protein EMX1-like.	T-box brain protein 1-like.	0.440
LOC107664735	LOC107676286	ENSSANP00000020050	ENSSANP00000068795	Homeobox protein EMX1-like.	T-box brain protein 1-like.	0.440
LOC107676286	ENSSANP00000034355	ENSSANP00000068795	ENSSANP00000034355	T-box brain protein 1-like.	annotation not available	0.454
LOC107676286	ENSSANP00000044327	ENSSANP00000068795	ENSSANP00000044327	T-box brain protein 1-like.	DNA-binding protein SATB2-like.	0.523
LOC107676286	ENSSANP00000045066	ENSSANP00000068795	ENSSANP00000045066	T-box brain protein 1-like.	DNA-binding protein SATB2-like.	0.523
LOC107676286	ENSSANP00000071087	ENSSANP00000068795	ENSSANP00000071087	T-box brain protein 1-like.	Dual specificity mitogen-activated protein kinase kinase 6 isoform X1.	0.454
LOC107676286	ENSSANP00000072692	ENSSANP00000068795	ENSSANP00000072692	T-box brain protein 1-like.	Forkhead box H1.	0.452
LOC107676286	ENSSANP00000087254	ENSSANP00000068795	ENSSANP00000087254	T-box brain protein 1-like.	Mitogen-activated protein kinase kinase 6.	0.454
LOC107676286	ENSSANP00000102423	ENSSANP00000068795	ENSSANP00000102423	T-box brain protein 1-like.	CD4-1 molecule.	0.521
LOC107676286	LOC107653269	ENSSANP00000068795	ENSSANP00000045239	T-box brain protein 1-like.	Forkhead box protein H1.	0.452
LOC107676286	LOC107662039	ENSSANP00000068795	ENSSANP00000063216	T-box brain protein 1-like.	Homeobox protein EMX1-like.	0.440
LOC107676286	LOC107664735	ENSSANP00000068795	ENSSANP00000020050	T-box brain protein 1-like.	Homeobox protein EMX1-like.	0.440

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

Experiments

Fusion

© STRING Consortium 2024

Credits

Access

Info

About