STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpsACapsular polysaccharide biosynthesis protein CpsA. (493 aa)    
Predicted Functional Partners:
epsC
Exopolysaccharide exporter accessory protein.
 
  
 0.863
cpsB
Capsular polysaccharide biosynthesis protein CpsB.
  
  
 0.820
wze
Tyrosine-protein kinase Wze.
  
  
 0.810
CQR24524.1
Capsular polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.807
CQR24525.1
Polysaccharide biosynthesis protein.
 
   
 0.750
licD1
LPS biosynthesis protein.
 
   
 0.689
CQR24523.1
UDP-galactose phosphate transferase.
     
 0.662
wzx
Polysaccharide flippase transporter.
 
  
 0.654
CQR24518.1
Nucleotide sugar dehydratase.
     
 0.631
CQR24519.1
Nucleotidyl transferase.
     
 0.615
Your Current Organism:
Streptococcus varani
NCBI taxonomy Id: 1608583
Other names: CSUR P1489, DSM 100884, S. varani, Streptococcus sp. FF10, strain FF10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.