STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMN10310.1Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family. (471 aa)    
Predicted Functional Partners:
KMN10312.1
RNA polymerase sigma-H factor AlgU; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.966
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.834
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
 
   0.699
KMN09582.1
Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.693
KMM99536.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.680
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
   0.676
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
  
  
 0.670
KMN10311.1
RNA polymerase sigma-H factor AlgU; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.668
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
   
 
 0.630
KMN09209.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.627
Your Current Organism:
Pseudomonas helleri
NCBI taxonomy Id: 1608996
Other names: DSM 29165, LMG 28433, LMG:28433, P. helleri, Pseudomonas helleri von Neubeck et al. 2016, Pseudomonas sp. DSM 28141, Pseudomonas sp. DSM 29141, Pseudomonas sp. DSM 29165, Pseudomonas sp. WS4999, Pseudomonas sp. WS5001, Pseudomonas sp. WS5002, strain WS4917
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