STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccoOPeptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
ccoP
Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.999
KIS30503.1
Cbb3-type cytochrome oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
ccoN
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
 0.999
ccoG
Nitrogen fixation protein FixG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
KIS30500.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
coxB-2
Cytochrome B561; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.976
KIS30629.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.957
ctaD-2
Cytochrome B561; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
    
 0.938
hemN
Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.938
cadA
Nitrogen fixation protein FixI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.933
Your Current Organism:
Novosphingobium sp. P6W
NCBI taxonomy Id: 1609758
Other names: N. sp. P6W
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