ALG89284.1 protein (Confluentimicrobium sp. EMB200NS6)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALG89284.1

ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)

Predicted Functional Partners:

ALG89283.1

0.931

ALG89282.1

0.920

ALG89281.1

0.863

ALG91791.1

0.834

ALG89324.1

0.827

ALG91423.1

0.819

ALG89285.1

0.787

ALG89286.1

0.787

ALG89287.1

0.787

ALG89253.1

0.779

Your Current Organism:

Confluentimicrobium sp. EMB200NS6

NCBI taxonomy Id: 1609966
Other names: C. sp. EMB200-NS6, Confluentimicrobium sp. EMB200-NS6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG89253.1	ALG89281.1	TQ29_02540	TQ29_02710	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
ALG89253.1	ALG89282.1	TQ29_02540	TQ29_02715	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.856
ALG89253.1	ALG89284.1	TQ29_02540	TQ29_02725	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
ALG89253.1	ALG89324.1	TQ29_02540	TQ29_02945	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.610
ALG89253.1	ALG91423.1	TQ29_02540	TQ29_16015	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.856
ALG89281.1	ALG89253.1	TQ29_02710	TQ29_02540	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.537
ALG89281.1	ALG89282.1	TQ29_02710	TQ29_02715	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.984
ALG89281.1	ALG89283.1	TQ29_02710	TQ29_02720	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.928
ALG89281.1	ALG89284.1	TQ29_02710	TQ29_02725	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
ALG89281.1	ALG89285.1	TQ29_02710	TQ29_02730	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdenum cofactor sulfurylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
ALG89281.1	ALG89286.1	TQ29_02710	TQ29_02735	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
ALG89281.1	ALG89287.1	TQ29_02710	TQ29_02740	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
ALG89281.1	ALG89324.1	TQ29_02710	TQ29_02945	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.509
ALG89281.1	ALG91423.1	TQ29_02710	TQ29_16015	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.952
ALG89281.1	ALG91791.1	TQ29_02710	TQ29_04520	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.441
ALG89282.1	ALG89253.1	TQ29_02715	TQ29_02540	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.856
ALG89282.1	ALG89281.1	TQ29_02715	TQ29_02710	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ALG89282.1	ALG89283.1	TQ29_02715	TQ29_02720	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.972
ALG89282.1	ALG89284.1	TQ29_02715	TQ29_02725	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ALG89282.1	ALG89285.1	TQ29_02715	TQ29_02730	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Molybdenum cofactor sulfurylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529