ALG89568.1 protein (Confluentimicrobium sp. EMB200NS6)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALG89568.1

Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)

Predicted Functional Partners:

ALG89567.1

0.990

ALG89569.1

0.849

ALG89356.1

0.606

ALG90816.1

0.603

ALG91789.1

0.539

metG

0.508

ALG90207.1

0.471

plsX

0.422

ALG89560.1

0.417

Your Current Organism:

Confluentimicrobium sp. EMB200NS6

NCBI taxonomy Id: 1609966
Other names: C. sp. EMB200-NS6, Confluentimicrobium sp. EMB200-NS6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG89356.1	ALG89568.1	TQ29_03140	TQ29_04415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
ALG89356.1	ALG90207.1	TQ29_03140	TQ29_08420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
ALG89356.1	ALG90816.1	TQ29_03140	TQ29_12195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Elongation factor P; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
ALG89356.1	metG	TQ29_03140	TQ29_03200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.526
ALG89560.1	ALG89567.1	TQ29_04365	TQ29_04410	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ALG89560.1	ALG89568.1	TQ29_04365	TQ29_04415	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
ALG89560.1	ALG90207.1	TQ29_04365	TQ29_08420	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
ALG89567.1	ALG89560.1	TQ29_04410	TQ29_04365	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ALG89567.1	ALG89568.1	TQ29_04410	TQ29_04415	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ALG89567.1	ALG89569.1	TQ29_04410	TQ29_04420	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
ALG89567.1	ALG91789.1	TQ29_04410	TQ29_04405	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
ALG89567.1	metG	TQ29_04410	TQ29_03200	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.468
ALG89567.1	plsX	TQ29_04410	TQ29_07690	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.	0.422
ALG89568.1	ALG89356.1	TQ29_04415	TQ29_03140	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
ALG89568.1	ALG89560.1	TQ29_04415	TQ29_04365	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
ALG89568.1	ALG89567.1	TQ29_04415	TQ29_04410	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ALG89568.1	ALG89569.1	TQ29_04415	TQ29_04420	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
ALG89568.1	ALG90207.1	TQ29_04415	TQ29_08420	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
ALG89568.1	ALG90816.1	TQ29_04415	TQ29_12195	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Elongation factor P; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
ALG89568.1	ALG91789.1	TQ29_04415	TQ29_04405	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539