ALG92026.1 protein (Confluentimicrobium sp. EMB200NS6)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALG92026.1

Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)

Predicted Functional Partners:

ALG91293.1

0.997

ALG89027.1

0.952

ALG91292.1

0.893

ALG91291.1

0.847

ALG91294.1

0.824

ALG90609.1

0.694

ALG91581.1

0.683

ALG91082.1

0.622

ftsQ

0.612

ALG88889.1

0.550

Your Current Organism:

Confluentimicrobium sp. EMB200NS6

NCBI taxonomy Id: 1609966
Other names: C. sp. EMB200-NS6, Confluentimicrobium sp. EMB200-NS6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG88889.1	ALG89027.1	TQ29_00285	TQ29_01190	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
ALG88889.1	ALG91581.1	TQ29_00285	TQ29_17020	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ALG88889.1	ALG92026.1	TQ29_00285	TQ29_15180	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
ALG89027.1	ALG88889.1	TQ29_01190	TQ29_00285	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.	0.445
ALG89027.1	ALG90609.1	TQ29_01190	TQ29_10910	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
ALG89027.1	ALG91082.1	TQ29_01190	TQ29_13940	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
ALG89027.1	ALG91293.1	TQ29_01190	TQ29_15185	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
ALG89027.1	ALG91581.1	TQ29_01190	TQ29_17020	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ALG89027.1	ALG92026.1	TQ29_01190	TQ29_15180	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
ALG90609.1	ALG89027.1	TQ29_10910	TQ29_01190	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
ALG90609.1	ALG91293.1	TQ29_10910	TQ29_15185	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ALG90609.1	ALG92026.1	TQ29_10910	TQ29_15180	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
ALG91082.1	ALG89027.1	TQ29_13940	TQ29_01190	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
ALG91082.1	ALG91294.1	TQ29_13940	TQ29_15190	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
ALG91082.1	ALG91581.1	TQ29_13940	TQ29_17020	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
ALG91082.1	ALG92026.1	TQ29_13940	TQ29_15180	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
ALG91291.1	ALG91292.1	TQ29_15170	TQ29_15175	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
ALG91291.1	ALG91293.1	TQ29_15170	TQ29_15185	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
ALG91291.1	ALG91294.1	TQ29_15170	TQ29_15190	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
ALG91291.1	ALG92026.1	TQ29_15170	TQ29_15180	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847