STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (229 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.985
AQP45130.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.
  
 0.933
AQP45354.1
Class II fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
    
 0.916
AQP43619.1
Thymidine phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.910
RPIT_03225
Inositol 2-dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.910
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
 0.910
AQP45027.1
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.908
AQP45759.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.902
AQP45760.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.901
RPIT_09190
Deoxyribonuclease; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.900
Your Current Organism:
Tessaracoccus flavus
NCBI taxonomy Id: 1610493
Other names: DSM 100159, KCTC 39686, MCC 2769, T. flavus, Tessaracoccus flavus Kumari et al. 2016, Tessaracoccus sp. RP1, strain RP1
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