STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_018219HTH_48 domain-containing protein. (349 aa)    
Predicted Functional Partners:
Cni-rbbp-5
WD_REPEATS_REGION domain-containing protein.
    
 0.657
Cni-ash-2
B30.2/SPRY domain-containing protein.
    
 0.657
B9Z55_008632
Ubiquitin-like domain-containing protein.
    
  0.651
B9Z55_025497
Uncharacterized protein.
   
 0.624
Cni-htz-1
Histone H2A; Belongs to the histone H2A family.
    
 0.617
Cni-ubl-1
Ubiquitin-like domain-containing protein.
    
  0.614
B9Z55_001429
WD_REPEATS_REGION domain-containing protein.
    
 0.608
B9Z55_001428
WD_REPEATS_REGION domain-containing protein.
    
 0.608
Cni-sir-2.1
Deacetylase sirtuin-type domain-containing protein.
    
 0.579
B9Z55_016711
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.576
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.