STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-mam-4Uncharacterized protein. (589 aa)    
Predicted Functional Partners:
Cni-tsg-101
SB domain-containing protein.
    
 0.974
Cni-vps-28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
    
 0.974
Cni-mvb-12
Uncharacterized protein.
   
 0.972
B9Z55_012950
UEV domain-containing protein.
    
 0.950
Cni-vps-25
Uncharacterized protein.
    
 0.848
Cni-vps-2
Uncharacterized protein.
    
 0.775
Cni-vps-36
GLUE N-terminal domain-containing protein.
     
 0.769
Cni-vps-24
Uncharacterized protein.
     
 0.766
Cni-vps-20
Uncharacterized protein.
     
 0.759
Cni-hgrs-1
Uncharacterized protein.
    
 0.755
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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