STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-npa-1Uncharacterized protein. (1193 aa)    
Predicted Functional Partners:
Cni-T19A5.1
Uncharacterized protein.
      
 0.811
Cni-T08G11.1
Uncharacterized protein.
      
 0.731
Cni-emb-5
Suppressor of Ty 6 homolog; May regulate transcriptional elongation by RNA polymerase II.
      
 0.592
Cni-rfp-1
E3 ubiquitin protein ligase.
      
 0.561
Cni-hoe-1
Lactamase_B domain-containing protein.
      
 0.560
Cni-R07E5.1
G-patch domain-containing protein.
      
 0.560
Cni-ubr-1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.560
Cni-pbrm-1
Uncharacterized protein.
      
 0.559
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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