STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-F36D4.5DUF862 domain-containing protein. (390 aa)    
Predicted Functional Partners:
Cni-ubql-1
Uncharacterized protein.
    
 
 0.881
Cni-rpn-10
VWFA domain-containing protein.
    
   0.776
Cni-rpn-5
PCI domain-containing protein.
   
   0.753
Cni-rpt-5
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
   0.751
Cni-rpt-1
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
   0.750
Cni-pas-2
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
    
   0.750
Cni-pas-6
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
    
   0.750
Cni-pbs-6
Proteasome subunit beta.
    
   0.750
Cni-ZK688.5
Ubiquitin-like domain-containing protein.
    
   0.750
Cni-rpn-12
PCI domain-containing protein.
    
   0.750
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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