STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_020613Integrase catalytic domain-containing protein. (815 aa)    
Predicted Functional Partners:
Cni-lin-54
CRC domain-containing protein.
    
 0.683
B9Z55_001428
WD_REPEATS_REGION domain-containing protein.
    
 0.682
B9Z55_006694
Uncharacterized protein.
    
 0.665
B9Z55_001429
WD_REPEATS_REGION domain-containing protein.
    
 0.658
Cni-lin-35
Uncharacterized protein.
    
 0.657
Cni-dut-1
Uncharacterized protein.
    
 0.655
Cni-rpa-1
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
 0.646
Cni-lin-9
DIRP domain-containing protein.
    
 0.638
Cni-rpa-2
Uncharacterized protein.
    
 0.630
Cni-rpa-4
Uncharacterized protein.
    
 0.630
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.