STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_012935Reverse transcriptase domain-containing protein. (524 aa)    
Predicted Functional Partners:
Cni-rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.789
B9Z55_008632
Ubiquitin-like domain-containing protein.
    
  0.729
Cni-ubl-1
Ubiquitin-like domain-containing protein.
    
  0.712
B9Z55_007830
Uncharacterized protein; Belongs to the complex I LYR family.
    
 0.707
Cni-tomm-40
Uncharacterized protein.
   
 0.663
Cni-rpl-21
Uncharacterized protein.
   
   0.654
Cni-mre-11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.639
B9Z55_010277
MPN domain-containing protein.
    
  0.628
B9Z55_004310
MPN domain-containing protein.
    
  0.628
B9Z55_004327
MPN domain-containing protein.
    
  0.628
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.