STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-ZK792.5Uncharacterized protein. (645 aa)    
Predicted Functional Partners:
Cni-byn-1
Uncharacterized protein.
   
 
 0.976
Cni-rbd-1
Uncharacterized protein.
   
 
 0.969
Cni-nol-5
Nop domain-containing protein.
   
   0.967
Cni-K05C4.5
Uncharacterized protein.
   
 
 0.953
Cni-Y73E7A.2
Uncharacterized protein.
   
 
 0.949
Cni-T01B7.5
Sas10 domain-containing protein.
   
   0.943
Cni-trcs-2
Uncharacterized protein.
   
   0.943
Cni-B0511.6
RNA helicase.
   
 
 0.937
Cni-F23B12.7
CBF domain-containing protein.
   
 
 0.931
Cni-Y48B6A.1
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
   0.929
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.