STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-ykt-6Uncharacterized protein; Belongs to the synaptobrevin family. (217 aa)    
Predicted Functional Partners:
Cni-syx-5
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.999
Cni-vti-1
t-SNARE coiled-coil homology domain-containing protein.
    
 0.999
Cni-gos-28
Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.999
Cni-sec-22
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.998
Cni-nbet-1
t-SNARE coiled-coil homology domain-containing protein.
    
 0.997
Cni-syx-6
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.996
Cni-F43D9.3
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.996
Cni-syx-7
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.996
Cni-syx-17
t-SNARE coiled-coil homology domain-containing protein.
   
 0.991
Cni-memb-1
Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.984
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.