STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_008553Uncharacterized protein. (905 aa)    
Predicted Functional Partners:
Cni-abcf-3
Uncharacterized protein.
   
 
 0.955
Cni-C02F5.3
OBG-type G domain-containing protein.
   
 
 0.903
Cni-rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.902
Cni-rps-3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.898
Cni-rps-13
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.896
Cni-rps-15
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.894
Cni-rps-2
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.892
Cni-rps-20
Ribosomal_S10 domain-containing protein.
   
   0.888
Cni-rack-1
WD_REPEATS_REGION domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.874
Cni-rps-9
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.873
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.