STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_009615SpoU_sub_bind domain-containing protein. (295 aa)    
Predicted Functional Partners:
Cni-mrpl-47
Uncharacterized protein.
   
 
 0.933
Cni-K12H4.2
Uncharacterized protein.
   
 
 0.932
Cni-mrpl-17
Uncharacterized protein.
  
 
 0.909
B9Z55_011556
Uncharacterized protein.
   
   0.902
B9Z55_003847
SH2 domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.900
Cni-Y67D2.4
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 
 0.859
Cni-mrpl-11
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.837
Cni-rpl-23
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
   
   0.825
Cni-rpl-16
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.819
Cni-mrpl-13
Uncharacterized protein.
  
 
 0.819
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.