STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_004238Uncharacterized protein. (564 aa)    
Predicted Functional Partners:
Cni-T08A11.1
DEP domain-containing protein.
    
 0.972
Cni-nprl-3
Uncharacterized protein.
    
 0.969
B9Z55_009506
WD_REPEATS_REGION domain-containing protein.
    
 0.969
Cni-immp-1
Peptidase_S24 domain-containing protein.
    
 0.969
B9Z55_027333
Uncharacterized protein.
    
 0.922
B9Z55_027367
C2H2-type domain-containing protein.
    
 0.922
Cni-nprl-2
Uncharacterized protein.
    
 0.922
B9Z55_028757
Signal peptidase complex catalytic subunit SEC11.
    
 0.873
Cni-immp-2
Uncharacterized protein.
    
 0.873
B9Z55_001033
Signal peptidase complex catalytic subunit SEC11.
    
 0.873
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.