STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z55_004117Uncharacterized protein. (491 aa)    
Predicted Functional Partners:
Cni-pab-2
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.572
Cni-K07H8.10
RRM domain-containing protein.
   
 0.572
Cni-pab-1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.572
B9Z55_001172
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.536
B9Z55_000421
RRM domain-containing protein.
    
 
 0.534
B9Z55_028425
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.530
B9Z55_013935
Uncharacterized protein.
   
 
 0.530
Cni-bcc-1
SAM domain-containing protein.
   
 
 0.530
Cni-ife-2
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.508
Cni-ife-3
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.508
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.